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Commits

AuthorCommitMessageCommit date
dcronkitedcronkite
2163147063eAdded code lookup example closer to SAS code; included a note in the SAS code
dcronkitedcronkite
71f779c1a88Added instructions/link to using phenorm_predict code
dcronkitedcronkite
db9b45b3f1dAdded anaphylaxis code lookup excel
dcronkiteGitHubdcronkite
6708e50f1e6Fixed indentation
dcronkitedcronkite
c7bff8702a5Fixed quotation marks
dcronkiteGitHubdcronkite
e5f6f29e8b3Fixed numbering
dcronkiteGitHubdcronkite
1139e8a2cbcClarified what quick start is for
dcronkiteGitHubdcronkite
3bb827f167eUpdate README.md with correct link for R
dcronkiteGitHubdcronkite
dfa96792c1fCreated README.md defining the steps to run for SAS Phenorm
dcronkiteGitHubdcronkite
a669343c9bbImproved quick start
dcronkiteGitHubdcronkite
0407750ca1aAdded quickstart into the README
dcronkiteGitHubdcronkite
1954e667c0dAdd references to SAS files
Brian WilliamsonGitHubBrian Williamson
4a611255aeaMMerge pull request #30 from bdwilliamson/mainRemove columns with zero variability in 01_process_data
Brian WilliamsonBrian Williamson
ebc07cc1b07Remove columns with zero variability in 01_process_dataRemoving columns with zero variability in 00_preprocess could work, but may cause problems for external model evaluation. Removing these columns only in the training data, during 01_process_data, ensures that model training is based on only informative columns, but that model evaluation can be based on columns that may have been used at the external model development site.
Brian WilliamsonGitHubBrian Williamson
d9a0dcc7388MMerge pull request #29 from bdwilliamson/mainAdd KPWA DI7 gold data analysis, capability for external model evaluation
Brian WilliamsonGitHubBrian Williamson
27a1466ab2bMMerge branch 'kpwhri:master' into main
Brian WilliamsonBrian Williamson
025d6f47e28Add analysis with DI7 labels, capability for external model validation
Arvind RamaprasanGitHubArvind Ramaprasan
0ec92844035Add files via upload
Arvind RamaprasanGitHubArvind Ramaprasan
9189b584febDelete 05_Silver_Label_and_Analytic_File_for_BrianW.sas
Arvind RamaprasanGitHubArvind Ramaprasan
e7d8a510e5bDelete 04_Clinical_Text_For_NLP.sas
Arvind RamaprasanGitHubArvind Ramaprasan
099ee262680Delete 03_Clinical_Text_Measures.sas
Arvind RamaprasanGitHubArvind Ramaprasan
aa972d3af2eDelete 02_Pull_Note_Text_and_SM_Records.sas
Arvind RamaprasanGitHubArvind Ramaprasan
28442e2f5a6Delete 01_define_cohort_AR.sas
Arvind RamaprasanGitHubArvind Ramaprasan
62bd961061aMMerge pull request #28 from kpwhri/Programming-Silver-LabelsAdd files via upload
Arvind RamaprasanGitHubArvind Ramaprasan
68b4349f81fAdd files via upload
Arvind RamaprasanGitHubArvind Ramaprasan
d10b055894bDelete Programming Silver Labels
Arvind RamaprasanGitHubArvind Ramaprasan
ee7ec762cd5Create Programming Silver Labels
Brian WilliamsonGitHubBrian Williamson
a5d20bff941MMerge pull request #27 from bdwilliamson/mainAdd tibble (for rowname_to_column) and pass weight_var, valid_label
Brian WilliamsonBrian Williamson
61f6a333c1eAdd tibble (for rowname_to_column) and pass weight_var, valid_label
Brian WilliamsonGitHubBrian Williamson
b73eee74cf3MMerge pull request #26 from bdwilliamson/mainFix weighted AUC cis
Brian WilliamsonBrian Williamson
cd544ff5ca0Fix weighted AUC cis
Brian WilliamsonBrian Williamson
da5bc9850ffFix weighted AUC cis
Brian WilliamsonGitHubBrian Williamson
ba6d81d2ffcMMerge pull request #25 from bdwilliamson/mainFix AUC CIs, add for weighted analysis
Brian WilliamsonGitHubBrian Williamson
2c3282dd0f8MMerge branch 'kpwhri:master' into main
Brian WilliamsonBrian Williamson
7e88fd1d31cFix AUC CI computation
Brian WilliamsonGitHubBrian Williamson
95a8fc3ca0dMMerge pull request #24 from bdwilliamson/mainAdd HOI 2.0 outcome for KPWA analysis
Brian WilliamsonGitHubBrian Williamson
c9504977e27MMerge branch 'kpwhri:master' into main
Brian WilliamsonBrian Williamson
bdeb4a40802Use HOI 2.0 outcome for scalable NLP anaphylaxis run
Brian WilliamsonGitHubBrian Williamson
55a6a6002ffMMerge pull request #23 from kpwhri/mainMerge changes from main
Brian WilliamsonGitHubBrian Williamson
8e2e754a2b4MMerge pull request #22 from bdwilliamson/mainFix merge conflicts
Brian WilliamsonBrian Williamson
faec28b04baMMerge remote-tracking branch 'upstream/master'
Brian WilliamsonGitHubBrian Williamson
3795beef09dMMerge pull request #20 from bdwilliamson/mainUpdates for anaphylaxis analysis
Brian WilliamsonBrian Williamson
8a4d832161aUpdate required packages
Brian WilliamsonBrian Williamson
ba60909f94cMinor updates
Brian WilliamsonBrian Williamson
fe0e799d9b6Bump up plot width more
Brian WilliamsonBrian Williamson
063f543f63eBump up plot width
Brian WilliamsonBrian Williamson
233731cbeb4Remove 'pred_prob_' prefix from hist titles
Brian WilliamsonBrian Williamson
28b4d8d3edaDon't set explicit number of rows and cols
Brian WilliamsonBrian Williamson
f9ed7ad94abMake plot a wrap, not grid
Brian WilliamsonBrian Williamson
a1384215760Double width of histogram plot